cswork / libraryOpen practice workspace

Interview guides · San Diego Supercomputer Center

San Diego Supercomputer Center Software Engineer Interview Guide

San Diego Supercomputer Center Software Engineer interview guide: reported rounds, questions and how candidates describe the process.

The 60-second brief

A Software Engineer at the San Diego Supercomputer Center (SDSC) operates at the intersection of high-performance computing (HPC), data science, and large-scale research infrastructure. You are not just writing code; you are building the digital foundations that enable researchers to solve some of the world’s most complex scientific problems, from climate modeling to bioinformatics and artificial intelligence. This role is critical to the mission of SDSC because your software directly impacts the efficiency and accessibility of massive datasets and supercomputing resources. You will work in a high-stakes, collaborative environment where your technical decisions have a tangible influence on the scientific community's ability to innovate. It is a unique position that balances rigorous systems-level engineering with the intellectual curiosity of a research-oriented institution.

This guide is scoped to a Software Engineer candidate at San Diego Supercomputer Center.

Focus areas

  • Programming (general)
  • Systems research (general)
  • Research and thesis communication

The San Diego Supercomputer Center interview process

San Diego Supercomputer Center candidates report 3 rounds over 3-5 weeks. The stages below are what candidates describe, not a published process.

Initial Screening

Focus on your background and alignment with the specific technologies mentioned in the job posting.

What to demonstrate

  • Focus on your background and alignment with the specific technologies mentioned in the job posting
  • Depth in Programming (general)

How to prepare

  • Be able to walk your CV end to end in two minutes, and say why this company specifically.
  • Have your salary expectations, notice period and location constraints ready, and ask for the rest of the loop in writing.

Onsite Experience

Participate in a comprehensive, multi-round onsite that includes a formal research presentation.

What to demonstrate

  • Participate in a comprehensive, multi-round onsite that includes a formal research presentation
  • Depth in Programming (general)

How to prepare

  • Answer aloud and timed: What specific technologies did you use to manage your data, and why were they the right choice?
  • Answer aloud and timed: How do you handle debugging when dealing with distributed systems or high-performance environments?

Individual Interviews

Engage in one-on-one interviews with peers and leadership following the research presentation.

What to demonstrate

  • Engage in one-on-one interviews with peers and leadership following the research presentation
  • Depth in Programming (general)

How to prepare

  • Answer aloud and timed: Can you explain the trade-offs you made in your system architecture?
  • Answer aloud and timed: How do you approach software modularity in a large-scale project?

Where candidates lose points

Own your narrative

Be prepared to provide a "story" for every project on your resume, detailing the challenge, your specific contribution, and the final impact.

Think aloud

When solving a technical problem on a whiteboard or screen, verbalize your thought process so the interviewer can follow your logic.

Ask meaningful questions

Use your interview time to ask about the team's current technical hurdles; it shows you are already thinking like a member of the team.

Review the basics

While the interview is research-heavy, don't ignore standard data structures and algorithm fundamentals, as these are still essential.

Questions & practice

Can you explain how you would optimize a specific algorithm for better performance?

Medium · Software Engineering Fundamentals

Approach

  1. Restate the input: its shape, its size, and what is guaranteed about it.
  2. Name the brute-force solution and its complexity before improving on it.
  3. Choose the data structure from the access pattern, not from familiarity.
  4. State the target complexity and say which constraint rules the naive version out.

Follow-up

  • How does this change if the input no longer fits in memory?
  • What is the worst case, and how likely is it on real data?

Archive a resource graph without breaking live references or recursing

Medium · graph traversal · topological order · tenant isolation

Resources reference other resources within a tenant; for the largest tenant the reference table holds up to 2,000,000 nodes and 8,000,000 edges. Archiving a resource must archive everything reachable from it that nothing outside the set still references, refuse when a live external referrer exists, and terminate when references form cycles, which they legitimately do. Produce the archive order and the refusal list, targeting O(V+E). Say what stops the traversal crossing a tenant boundary, and why recursion is the wrong control structure at this size.

Approach

  1. Load the subgraph with the tenant predicate on both endpoints of the edge, not only on the side you started from. Scoping the left table alone is the classic cross-tenant leak: one mis-entered edge then pulls another tenant's resources into the traversal and, worse, into the archive.
  2. Traverse iteratively with an explicit stack. A 2,000,000-node graph can hold a chain deep enough to exhaust a native stack in the low tens of thousands of frames, and that failure is a process crash rather than an error you can return.
  3. Treat cycles as data rather than corruption: compute strongly connected components with Tarjan in O(V+E) using its own explicit stack, then condense. The condensation is a DAG, so a topological order over it gives the archive order, and every member of a component archives in one transaction because no order within a cycle is valid.
  4. Decide refusals with reverse edges. A candidate is archivable only if every in-edge originates inside the candidate set, so build the transpose or count in-degrees restricted to the visited set, and emit each blocked resource with the id of the external referrer, which is the only part of the answer an operator can act on.

Follow-up

  • The graph is read in one query and the archive writes a minute later. What can change in between, and how do you make the write safe?
  • The candidate set is 400,000 resources. Is that one transaction, and if not, what does a half-finished archive look like to a reader?

Find overlapping job attempts and peak concurrency from lease records

Medium · sweep line · intervals · leases

A day of job_run history yields about 50,000,000 attempt records: (job_run_id, job_type, attempt, started_at, finished_at which is NULL when the worker died, lease_expires_at). Leases expire on a clock, so a job that outran its lease ran twice. Produce (a) every job_run_id whose attempts overlapped in wall-clock time and (b) the peak number of simultaneously running attempts per job_type with the minute it occurred. Target O(n log n). State how you treat a NULL finished_at and what clock skew does to your answer.

Approach

  1. Define the interval before sorting anything: an attempt occupies [started_at, COALESCE(finished_at, lease_expires_at)). finished_at is observed and lease_expires_at is only a promise, so every attempt without a finish contributes an estimate and the whole result is a lower bound on overlap rather than an exact count.
  2. For peak concurrency, sweep: emit 2n endpoints, sort by (timestamp, kind) with ends ordered before starts at equal timestamps, then walk the sequence maintaining a counter per job_type and record each type's maximum with its timestamp. O(n log n) dominated by the sort, O(n) space, or O(1) extra if the sort is external and the walk streams.
  3. For overlap detection, do not compare attempts pairwise. A single global sort by (job_run_id, started_at) gives both the grouping and the order; within a group, keep the maximum end seen so far and report an overlap exactly when the next start is less than that running maximum, which is one linear pass after the sort.
  4. Half-open intervals matter and are easy to get wrong: with closed intervals an attempt ending at the same millisecond another begins reads as concurrency two, and across 50,000,000 records that artefact swamps the real signal.

Follow-up

  • A handler is not idempotent and you have found 400 overlapping jobs. Which of them actually caused damage, and what would you query to find out?
  • Peak concurrency for one job_type is 4 against a configured cap of 4. Is the cap working, or is the data hiding attempts that never started?

Stop tag and share joins from fanning out a page

Medium · join fan-out · semi-joins · many-to-many

resource_tag is (resource_id, tag_id) with PK (resource_id, tag_id); resource_share is (resource_id, shared_with_user_id, permission). The tagged-and-shared listing inner-joins resource to both, filters tenant_id, tag_id = ANY($2) and shared_with_user_id = $3, orders by updated_at DESC and takes 50. Pages come back with fewer than 50 distinct resources and the total in the header is far too high. Explain the row multiplication, rewrite both the page query and the count query so each is correct, and name the index each one needs. PostgreSQL 16.

Approach

  1. Do the arithmetic against the predicates that are actually there. An inner join emits one row per matching child row, and both joins are filtered: tag_id = ANY($2) admits only the requested tags, shared_with_user_id = $3 admits one user's share rows. So a resource holding three of the requested tags and shared with $3 once yields three rows, not one — the multiplier is its count of matching tags times its share rows for that single user, and that second factor is 1 unless the table admits duplicate (resource_id, shared_with_user_id) pairs. LIMIT 50 then limits rows rather than resources, and COUNT(*) counts pairs — the header is the product, not the population.
  2. Reject DISTINCT as the fix. It deduplicates after the product has been built, so the planner must materialise and sort the fanned-out set before the LIMIT can apply, and it leaves any SUM or AVG in the same select list wrong.
  3. Rewrite both filters as semi-joins, keeping resource as the only row source: AND EXISTS (SELECT 1 FROM resource_tag rt WHERE rt.resource_id = r.resource_id AND rt.tag_id = ANY($2)) and the same shape against resource_share. A semi-join stops at the first match per resource and preserves the driving index order, so ORDER BY updated_at DESC, resource_id DESC LIMIT 50 still stops after 50 rows.
  4. Count with the same predicates and no join at all: SELECT count(*) FROM resource r WHERE r.tenant_id = $1 AND r.status = 'active' AND EXISTS (...) AND EXISTS (...). Nothing multiplies a resource, so the number is the population.

Follow-up

  • The filter changes from 'any of these tags' to 'all of these tags'. Rewrite it and state what it costs relative to the ANY form.
  • A resource can be shared with the same user twice under different permissions. Does your count change, and should it?

Denormalise tenant onto revisions and backfill it live

Hard · denormalisation · online migration · backfill

resource_revision (revision_id, resource_id, version, actor_user_id, change_kind, patch, request_id, created_at) has 400M rows and no tenant column; tenant_id lives only on resource. Two reads need it: a tenant-scoped audit feed ordered by created_at DESC, and an offboarding purge. Both join back to resource today. Justify adding tenant_id to resource_revision against those two reads, name the anomaly the copy introduces and the constraint that prevents it, then give the ordered migration for a live table taking 1.2k writes/second — the lock each step takes, how the backfill is batched, and where each step stops being reversible. PostgreSQL 16.

Approach

  1. Justify from the access path rather than from taste. Without the column, the audit feed either scans resource_revision by created_at and discards other tenants' rows, or resolves the tenant's resource_ids first and probes with them — both proportional to the tenant's whole history rather than to one page. With (tenant_id, created_at DESC, revision_id DESC) it is a seek that stops at 50 rows, and the purge becomes a ranged delete instead of a join.
  2. Name the cost exactly: a second copy of a fact can disagree with the first. Make the disagreement unwritable rather than documented — add UNIQUE (resource_id, tenant_id) on resource so it can serve as a foreign-key target, then FOREIGN KEY (resource_id, tenant_id) REFERENCES resource (resource_id, tenant_id) on the revision table. A revision can then only ever carry its parent's tenant.
  3. Step one, expand: ALTER TABLE resource_revision ADD COLUMN tenant_id BIGINT NULL, with no default, so it is a catalogue change and no rewrite. It still needs ACCESS EXCLUSIVE for an instant, and that instant queues behind the longest open transaction on the table while every later query queues behind it — set lock_timeout to 2s and retry rather than wait.
  4. Step two, dual-write: deploy the writer that populates tenant_id on every new revision while reads still use the join. Reversible by redeploying the previous build, because nothing reads the column yet.

Follow-up

  • The backfill is half finished and a rollback is required. What state is the table in, and what does the previous build do with a half-populated column?
  • How do you verify the backfill actually finished, given rows are still being inserted while it runs?

Can you walk us through the core technical challenges of your recent research or project?

Medium · Research and Technical Depth

Approach

  1. Clarify what is being asked and what a complete answer contains.
  2. State your assumptions explicitly before working the problem.
  3. Say what you would check first and why it is the highest-information step.
  4. Work from the requirement backwards to the design.

Follow-up

  • What assumption would you test first?
  • How would you know your answer was wrong?

How did you optimize your code to handle the scale required by your research?

Medium · Research and Technical Depth

Approach

  1. Clarify what is being asked and what a complete answer contains.
  2. State your assumptions explicitly before working the problem.
  3. Say what you would check first and why it is the highest-information step.
  4. Work from the requirement backwards to the design.

Follow-up

  • What assumption would you test first?
  • How would you know your answer was wrong?

What specific technologies did you use to manage your data, and why were they the right choice?

Medium · Research and Technical Depth

Approach

  1. Clarify what is being asked and what a complete answer contains.
  2. State your assumptions explicitly before working the problem.
  3. Say what you would check first and why it is the highest-information step.
  4. Work from the requirement backwards to the design.

Follow-up

  • What assumption would you test first?
  • How would you know your answer was wrong?

Can you explain the trade-offs you made in your system architecture?

Medium · Research and Technical Depth

Approach

  1. Fix the scope first: who calls this, how often, and what they do when it fails.
  2. Name the read and write paths separately; they rarely have the same bottleneck.
  3. Choose a partition key and say what query it makes expensive.
  4. State the consistency you need, and where you are willing to be stale.

Follow-up

  • What breaks first when traffic grows ten times?
  • How does this behave when that dependency is down for an hour?

How do you approach software modularity in a large-scale project?

Medium · Software Engineering Fundamentals

Approach

  1. Clarify what is being asked and what a complete answer contains.
  2. State your assumptions explicitly before working the problem.
  3. Say what you would check first and why it is the highest-information step.
  4. Work from the requirement backwards to the design.

Follow-up

  • What assumption would you test first?
  • How would you know your answer was wrong?

What is your process for testing and ensuring the reliability of your software?

Medium · Software Engineering Fundamentals

Approach

  1. Clarify what is being asked and what a complete answer contains.
  2. State your assumptions explicitly before working the problem.
  3. Say what you would check first and why it is the highest-information step.
  4. Work from the requirement backwards to the design.

Follow-up

  • What assumption would you test first?
  • How would you know your answer was wrong?

What are the advantages and disadvantages of the programming languages you use most frequently?

Medium · Software Engineering Fundamentals

Approach

  1. Clarify what is being asked and what a complete answer contains.
  2. State your assumptions explicitly before working the problem.
  3. Say what you would check first and why it is the highest-information step.
  4. Work from the requirement backwards to the design.

Follow-up

  • What assumption would you test first?
  • How would you know your answer was wrong?

How do you ensure your code is maintainable and well-documented for other researchers?

Medium · Software Engineering Fundamentals

Approach

  1. Clarify what is being asked and what a complete answer contains.
  2. State your assumptions explicitly before working the problem.
  3. Say what you would check first and why it is the highest-information step.
  4. Work from the requirement backwards to the design.

Follow-up

  • What assumption would you test first?
  • How would you know your answer was wrong?

Listing latency scales with page size, not with filters

Easy · n+1 · latency · query batching

The tenant listing endpoint reads resource filtered by tenant_id and status, ordered by updated_at DESC, and returns each row plus the owner's display name from app_user and the actor of that resource's latest resource_revision. p99 is 55 ms at 10 rows per page and 1.4 s at 200. Database telemetry shows 401 statements per request, each under 1 ms, and nothing in the slow-query log. Diagnose the cause and give the fix, stating the statement count per request and the p99 you expect afterwards.

Approach

  1. Read the counters before forming a theory. 401 statements for 200 rows is one driver query plus two per row, and sub-millisecond execution with an empty slow-query log rules out a bad plan. The time is round trips, which is why it is invisible in every per-query metric and scales with rows returned rather than with filter selectivity.
  2. Name the two per-row statements from their normalised text: a single-row app_user lookup by user_id, and a resource_revision lookup by resource_id ordered by version DESC LIMIT 1. Confirm by dropping those two response fields and watching the statement count fall to one. That locates the calls in the serialisation layer, not the repository.
  3. Check that the arithmetic accounts for the whole gap. Measure one round trip to the replica in isolation; 400 trips at roughly 3 ms of network plus 0.2 ms of execution is about 1.3 s on top of a 55 ms baseline, which matches. If the multiplication had fallen short, the N+1 would only be part of the story and you would keep looking.
  4. Batch both lookups. Collect owner_user_ids and resource_ids from the driver query, then issue WHERE tenant_id = $1 AND user_id = ANY($2) for the users, and PostgreSQL's SELECT DISTINCT ON (resource_id) ... WHERE resource_id = ANY($2) ORDER BY resource_id, version DESC for the latest revision, which the UNIQUE (resource_id, version) index serves directly. On an engine without DISTINCT ON, use a lateral join or a row_number window. Three statements per request at any page size.

Follow-up

  • The page size is capped at 200 today. What breaks first if it is raised to 2,000, and is it still this bug?
  • How do you stop the next N+1 from reaching production, given that no individual query is slow and the endpoint's tests pass?

Suggested practice checklist

Built from the rounds and topics San Diego Supercomputer Center candidates report.

Day 1 — Map the San Diego Supercomputer Center loop

  • Write out the reported sequence: Initial Screening, Onsite Experience, Individual Interviews.
  • For each round, write one sentence on what it is judging, from the description above, and mark the one you are least ready for.

Deliverable: A one-page map of the 3 reported rounds, with the weakest marked.

Day 2 — Work Programming (general)

  • Spend the session on Programming (general), which San Diego Supercomputer Center candidates report being tested on.
  • Write one worked example in Programming (general) and time yourself on it.

Deliverable: One timed worked example in Programming (general).

Day 3 — Work Systems research (general)

  • Spend the session on Systems research (general), which San Diego Supercomputer Center candidates report being tested on.
  • Write one worked example in Systems research (general) and time yourself on it.

Deliverable: One timed worked example in Systems research (general).

Day 4 — Work Research and thesis communication

  • Spend the session on Research and thesis communication, which San Diego Supercomputer Center candidates report being tested on.
  • Write one worked example in Research and thesis communication and time yourself on it.

Deliverable: One timed worked example in Research and thesis communication.

Day 5 — Answer out loud: Research and Technical Depth

  • Answer aloud, timed: Can you walk us through the core technical challenges of your recent research or project?
  • Answer aloud, timed: How did you optimize your code to handle the scale required by your research?

Deliverable: Spoken answers to 2 reported Research and Technical Depth question(s), under time.

Day 6 — Answer out loud: Software Engineering Fundamentals

  • Answer aloud, timed: How do you approach software modularity in a large-scale project?
  • Answer aloud, timed: What is your process for testing and ensuring the reliability of your software?

Deliverable: Spoken answers to 2 reported Software Engineering Fundamentals question(s), under time.

Day 7 — Dry run for San Diego Supercomputer Center

  • Run one full mock under time, then write down the two questions you most want to ask your interviewers.

Deliverable: A completed timed mock and two questions to ask.

Behavioural preparation

Behavioural rounds judge the decision you made and what it cost.

How do you handle debugging when dealing with distributed systems or high-performance environments?

Medium · Research and Technical Depth

Approach

  1. Pick a story where you made the decision, not one where you watched it.
  2. State the situation in two sentences and spend the rest on the reasoning.
  3. Give the blast radius: what could have broken, and what you measured.
  4. Name the disagreement and how you resolved it with evidence.

Follow-up

  • What would you do differently if you ran that again?
  • How did you know your change caused the improvement?

Reverse your own decision and price the reversal

Medium · reversibility · measurement · migrations

Describe a technical decision you made and later reversed. Pick one that cost something: a service you split and merged back, a cache you added and removed, an index you created that pushed the planner onto a worse plan, a projection you rebuilt from scratch. State what you believed when you decided, the measurement that changed your mind, how long the wrong version ran in production, and what the reversal cost in migrations, dual writes, and a deprecation window for callers you did not own.

Approach

  1. State the original rationale without irony, in the version you would still defend given what was known then. If it is not defensible, the story is about carelessness rather than judgement, and a different example serves you better.
  2. Give the measurement that moved with a before and after: the p99 that did not improve, the cache hit rate that sat at 40%, the plan that flipped to a sequential scan once the table passed a size you can name.
  3. Cost the reversal in steps, not adjectives: expand-and-contract deploys, the dual-write window, the callers who had to be notified, the rows already written in the wrong shape that had to be backfilled or abandoned.
  4. Distinguish reversal from rewrite by naming what you kept. Most good reversals preserve the schema or the interface and undo one decision inside it, which is also why they were affordable.

Follow-up

  • What in that decision was irreversible, and did you know it was irreversible when you made it?
  • How did you tell the people who had already built on top of the original decision?

Estimate work you have never done and defend the range

Hard · estimation · backfills · expand-contract

You are asked to estimate a change you have never attempted: add a column to a 100-million-row table, populate it, move reads across, and drop the old shape. Give a range with the assumptions that generate it, including batch size, the signal your backfill throttles on, and wall-clock hours, and name the three unknowns that would move the number most. Then describe a real estimate you gave under comparable ignorance: how you expressed its uncertainty, what you committed to, and how wrong you turned out to be.

Approach

  1. Decompose into independently deployable steps before estimating anything: add the column nullable, write both shapes, backfill in batches, verify, move reads, stop writing the old shape, drop it. That is four deploys spread over days, and the calendar estimate is dominated by them rather than by the loop's runtime.
  2. Do the arithmetic aloud for the part that has arithmetic in it: batch size times number of batches times per-batch duration, at a write rate the primary can absorb alongside roughly 1.2k writes per second of production traffic. The loop is throttled by replication lag and lock waits, not by how fast it can issue statements.
  3. Price the schema step by its lock rather than its statement duration. In PostgreSQL an ALTER TABLE taking ACCESS EXCLUSIVE waits for every open transaction on that table while later queries queue behind it, so a millisecond change issued during a thirty-second analytics query stalls that table for thirty seconds. Adding a nullable column with a non-volatile default avoids a rewrite from version 11; a new index wants CREATE INDEX CONCURRENTLY, which cannot run inside a transaction block and leaves an invalid index behind if it fails.
  4. Express the answer as a range whose endpoints each trace to a stated assumption, then name the cheapest experiment that collapses it, which is almost always running one real batch against the real table and multiplying.

Follow-up

  • How do you verify the backfill genuinely finished, given rows written by production traffic while it ran?
  • Where does the backfill resume from after a worker is killed mid-batch, and what makes that resume point trustworthy?