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Integrated DNA Technologies Software Engineer Interview Guide

Integrated DNA Technologies Software Engineer interview guide: reported rounds, questions and how candidates describe the process.

The 60-second brief

As a Software Engineer at Integrated DNA Technologies, you serve as a critical bridge between complex biotechnology requirements and scalable software solutions. You are not just writing code; you are building the digital infrastructure that powers genomic research, synthetic biology, and manufacturing excellence. Your work directly impacts the precision and reliability of the tools scientists use to advance human health and medicine. This role requires a unique blend of technical proficiency and a genuine interest in the life sciences. You will be expected to navigate the intersection of software development and industrial-scale manufacturing, often working in lean, high-focus teams.

This guide is scoped to a Software Engineer candidate at Integrated DNA Technologies.

Focus areas

  • End-to-end Problem Solving
  • SQL Query Writing
  • Technical Coding (General)

The Integrated DNA Technologies interview process

Integrated DNA Technologies candidates report 3 rounds over 3-5 weeks. The stages below are what candidates describe, not a published process.

Phone Screening

Initial call to align on your background and interest in the role.

What to demonstrate

  • Initial call to align on your background and interest in the role
  • Depth in End-to-end Problem Solving

How to prepare

  • Be able to walk your CV end to end in two minutes, and say why this company specifically.
  • Have your salary expectations, notice period and location constraints ready, and ask for the rest of the loop in writing.

Technical Discussions

Series of deeper technical discussions, including individual interviews.

What to demonstrate

  • Series of deeper technical discussions
  • Including individual interviews

How to prepare

  • Answer aloud and timed: How would you design a game of monopoly? (Tests system design and logical modeling)
  • Answer aloud and timed: Describe a technical challenge you solved.

Panel Session

Multi-interviewer session with several team members to assess fit and technical skills.

What to demonstrate

  • Multi-interviewer session with several team members to assess fit and technical skills
  • Depth in End-to-end Problem Solving

How to prepare

  • Answer aloud and timed: Given a relational database schema, write several queries with increasing difficulty to return requested output.
  • Answer aloud and timed: Describe a problem you solved end to end.

Where candidates lose points

Show Genuine Interest

Research the intersection of software and synthetic biology. Your enthusiasm for the company’s mission is a significant differentiator.

Prepare Your Stories

Have 3–4 detailed stories ready about technical challenges you have solved. Focus on the constraints, your specific actions, and the measurable outcome.

Ask Thoughtful Questions

Use the interview to learn about the team’s current technical hurdles. Asking about their technology stack or how they prioritize technical debt shows senior-level thinking.

Be Honest About Your Limits

If you do not know the answer to a specific technical question, explain how you would go about finding the answer. This demonstrates resourcefulness, which is highly valued.

Questions & practice

Collapse a redelivered event batch into per-aggregate high-water marks

Easy · hashing · at-least-once · aggregation

You drain a batch of up to 5,000,000 events, each (aggregate_id BIGINT, aggregate_version INT, event_type, payload). The log guarantees order within one aggregate only; the batch merges 64 partitions, and a relay failover has redelivered a range, so an older version for an aggregate can appear after a newer one. Given a map of last_applied_version per aggregate, produce the events worth applying, at most one per (aggregate_id, version), plus the count discarded. Target O(n) time. State the memory for 2,000,000 distinct aggregates and what you do when it does not fit.

Approach

  1. One pass, one hash map from aggregate_id to the highest version kept, and a discard counter. An event whose version is at or below last_applied_version for its aggregate is dropped without further work, which is the whole reason the event carries its version rather than a delta. O(n) expected time, O(d) space in distinct aggregates.
  2. Keep the maximum, never the last occurrence. The redelivered range means the final appearance of an aggregate in the batch can be an older version than one seen earlier in the same batch, so last-wins applies stale state over newer state and the projection regresses with no error anywhere.
  3. Cost the memory instead of calling it large: an 8-byte key plus a 4-byte version is 12 bytes of payload, and an open-addressed table held at a 0.7 load factor costs roughly 17 bytes per entry before per-slot metadata, so 2,000,000 aggregates is tens of megabytes in a native layout and several times that in a runtime that boxes both key and value.
  4. If the distinct set exceeds memory, partition on hash(aggregate_id) mod P and reduce each partition independently. Every event for one aggregate hashes to the same partition, so the per-partition result is exact and the merge is concatenation rather than a second reduction.

Follow-up

  • The payload is a patch rather than a snapshot, so applying only the highest version loses the intermediate changes. What changes in your reduction?
  • How do you detect that version 7 arrived while version 6 was never delivered, and what should the consumer do about the gap?

Merge partitioned event streams into one ordered feed with bounded lateness

Hard · k-way merge · watermarks · out-of-order streams

The read-model service consumes 64 log partitions carrying about 4,000 events per second in total. Each partition is ordered within itself, but partitions drift by up to 30 seconds, and the activity feed must present a tenant's events in occurred_at order. Produce the merge. State its complexity, the buffer it requires in events and in bytes, what happens when one partition is idle, and what you do with an event that arrives after you have already emitted its position. Payloads average 1 KB.

Approach

  1. Merge with a min-heap over the 64 partition heads keyed on (occurred_at, event_id): O(log P) per event and O(n log P) overall. The tie-break on event_id is what makes the output deterministic when two partitions carry the same millisecond, which matters because the feed is paginated and a non-deterministic order reorders pages under the reader.
  2. Emitting the heap head is only correct once every partition has produced everything up to that timestamp, so the emit condition is a watermark: the minimum across partitions of the highest occurred_at seen, less the allowed lateness. Events are held until the watermark passes them, which is what turns individually ordered streams into a jointly ordered one.
  3. Size the buffer from the lateness rather than guessing: 4,000 events per second times 30 seconds is 120,000 buffered events, and at 1 KB each about 120 MB of heap. That number is the real price of the ordering guarantee and belongs in front of whoever asked for it.
  4. Handle the idle partition explicitly, because it fails the feed rather than corrupting it: a partition with no traffic never advances its own maximum, so the watermark freezes and output stops entirely. Either every partition emits a periodic idle marker carrying the broker's current time, or the watermark falls back to wall clock for a partition silent beyond a threshold.

Follow-up

  • The lateness budget is raised to five minutes. What is the new buffer, and what besides memory changes?
  • The consumer restarts. Where does it resume from, and what does the feed look like for the first 30 seconds?

Archive a resource graph without breaking live references or recursing

Medium · graph traversal · topological order · tenant isolation

Resources reference other resources within a tenant; for the largest tenant the reference table holds up to 2,000,000 nodes and 8,000,000 edges. Archiving a resource must archive everything reachable from it that nothing outside the set still references, refuse when a live external referrer exists, and terminate when references form cycles, which they legitimately do. Produce the archive order and the refusal list, targeting O(V+E). Say what stops the traversal crossing a tenant boundary, and why recursion is the wrong control structure at this size.

Approach

  1. Load the subgraph with the tenant predicate on both endpoints of the edge, not only on the side you started from. Scoping the left table alone is the classic cross-tenant leak: one mis-entered edge then pulls another tenant's resources into the traversal and, worse, into the archive.
  2. Traverse iteratively with an explicit stack. A 2,000,000-node graph can hold a chain deep enough to exhaust a native stack in the low tens of thousands of frames, and that failure is a process crash rather than an error you can return.
  3. Treat cycles as data rather than corruption: compute strongly connected components with Tarjan in O(V+E) using its own explicit stack, then condense. The condensation is a DAG, so a topological order over it gives the archive order, and every member of a component archives in one transaction because no order within a cycle is valid.
  4. Decide refusals with reverse edges. A candidate is archivable only if every in-edge originates inside the candidate set, so build the transpose or count in-degrees restricted to the visited set, and emit each blocked resource with the id of the external referrer, which is the only part of the answer an operator can act on.

Follow-up

  • The graph is read in one query and the archive writes a minute later. What can change in between, and how do you make the write safe?
  • The candidate set is 400,000 resources. Is that one transaction, and if not, what does a half-finished archive look like to a reader?

Given a relational database schema, write several queries with increasing difficulty to return requested outpu

Medium · Technical & Domain Knowledge

Given a relational database schema, write several queries with increasing difficulty to return requested output.

Approach

  1. Name the grain you start from and join outward from it.
  2. Check whether any join is one-to-many before aggregating, or the sums inflate.
  3. Say which index the query would use, and what makes it unusable.
  4. Handle the rows that do not match: that is usually the actual question.

Follow-up

  • How does the query change if that join becomes one-to-many?
  • What happens to this when the table is ten times larger?

Stop tag and share joins from fanning out a page

Medium · join fan-out · semi-joins · many-to-many

resource_tag is (resource_id, tag_id) with PK (resource_id, tag_id); resource_share is (resource_id, shared_with_user_id, permission). The tagged-and-shared listing inner-joins resource to both, filters tenant_id, tag_id = ANY($2) and shared_with_user_id = $3, orders by updated_at DESC and takes 50. Pages come back with fewer than 50 distinct resources and the total in the header is far too high. Explain the row multiplication, rewrite both the page query and the count query so each is correct, and name the index each one needs. PostgreSQL 16.

Approach

  1. Do the arithmetic against the predicates that are actually there. An inner join emits one row per matching child row, and both joins are filtered: tag_id = ANY($2) admits only the requested tags, shared_with_user_id = $3 admits one user's share rows. So a resource holding three of the requested tags and shared with $3 once yields three rows, not one — the multiplier is its count of matching tags times its share rows for that single user, and that second factor is 1 unless the table admits duplicate (resource_id, shared_with_user_id) pairs. LIMIT 50 then limits rows rather than resources, and COUNT(*) counts pairs — the header is the product, not the population.
  2. Reject DISTINCT as the fix. It deduplicates after the product has been built, so the planner must materialise and sort the fanned-out set before the LIMIT can apply, and it leaves any SUM or AVG in the same select list wrong.
  3. Rewrite both filters as semi-joins, keeping resource as the only row source: AND EXISTS (SELECT 1 FROM resource_tag rt WHERE rt.resource_id = r.resource_id AND rt.tag_id = ANY($2)) and the same shape against resource_share. A semi-join stops at the first match per resource and preserves the driving index order, so ORDER BY updated_at DESC, resource_id DESC LIMIT 50 still stops after 50 rows.
  4. Count with the same predicates and no join at all: SELECT count(*) FROM resource r WHERE r.tenant_id = $1 AND r.status = 'active' AND EXISTS (...) AND EXISTS (...). Nothing multiplies a resource, so the number is the population.

Follow-up

  • The filter changes from 'any of these tags' to 'all of these tags'. Rewrite it and state what it costs relative to the ANY form.
  • A resource can be shared with the same user twice under different permissions. Does your count change, and should it?

What do you know about EHS (Environment, Health, and Safety)?

Medium · Technical & Domain Knowledge

Approach

  1. Clarify what is being asked and what a complete answer contains.
  2. State your assumptions explicitly before working the problem.
  3. Say what you would check first and why it is the highest-information step.
  4. Work from the requirement backwards to the design.

Follow-up

  • What assumption would you test first?
  • How would you know your answer was wrong?

How many types of valves can you name?

Medium · Technical & Domain Knowledge

Approach

  1. Clarify what is being asked and what a complete answer contains.
  2. State your assumptions explicitly before working the problem.
  3. Say what you would check first and why it is the highest-information step.
  4. Work from the requirement backwards to the design.

Follow-up

  • What assumption would you test first?
  • How would you know your answer was wrong?

How would you design a game of monopoly? (Tests system design and logical modeling)

Medium · Technical & Domain Knowledge

Approach

  1. Fix the scope first: who calls this, how often, and what they do when it fails.
  2. Name the read and write paths separately; they rarely have the same bottleneck.
  3. Choose a partition key and say what query it makes expensive.
  4. State the consistency you need, and where you are willing to be stale.

Follow-up

  • What breaks first when traffic grows ten times?
  • How does this behave when that dependency is down for an hour?

Describe a technical challenge you solved.

Medium · Technical & Domain Knowledge

Approach

  1. Clarify what is being asked and what a complete answer contains.
  2. State your assumptions explicitly before working the problem.
  3. Say what you would check first and why it is the highest-information step.
  4. Work from the requirement backwards to the design.

Follow-up

  • What assumption would you test first?
  • How would you know your answer was wrong?

Exports duplicate a row range about once a week

Hard · leases · clock skew · idempotency

Roughly once a week an export writes a file containing a duplicated range of rows. The affected job_run rows show attempt = 1, status = succeeded, one started_at, and a lease_owner naming a different host from the one whose logs show the job starting. Leases last 30 seconds and are heartbeated every 10 from inside the handler; lease_expires_at is computed on the worker and compared against the database's now(). Find the mechanism, and give a fix that holds even if you cannot fix the clocks.

Approach

  1. Start from the fact that eliminates the obvious answer. attempt = 1 means no retry was recorded, so this is not a re-run after failure; two workers ran the same row concurrently and the takeover path never touched the counter. lease_owner naming a host other than the one that started the job is the same statement from the other side.
  2. Enumerate the mechanisms that cause a premature takeover, then find the signal that separates them. Either the lease genuinely expired because the heartbeat did not fire, which is what happens when the heartbeat runs on the handler's own thread and the handler makes a long blocking call, or it only appeared expired because two clocks disagree, since lease_expires_at is written from the worker's clock and evaluated against the database's. The discriminator is the distribution: incidents clustered on the longest exports indict the heartbeat, incidents clustered on one host indict skew. Measure both, and measure each host's offset against the database directly.
  3. Read the reclaim query precisely. In PostgreSQL now() is transaction start time, not statement time, so a reclaimer holding a long transaction compares against an older timestamp than expected; clock_timestamp() is the statement-time function. This is worth ruling in or out before you redesign anything, because it changes which rows look expired.
  4. Remove the second clock rather than trying to synchronise it. Issue and extend the lease in the database, with lease_expires_at = now() + interval '30 seconds' in both the claim and the heartbeat, so exactly one clock is ever compared and worker skew stops mattering to this predicate.

Follow-up

  • The displaced worker has already streamed half the file to object storage. What makes that side effect safe to repeat?
  • You now count takeovers. What alert fires on that counter, and at what threshold?

Suggested practice checklist

Built from the rounds and topics Integrated DNA Technologies candidates report.

Day 1 — Map the Integrated DNA Technologies loop

  • Write out the reported sequence: Phone Screening, Technical Discussions, Panel Session.
  • For each round, write one sentence on what it is judging, from the description above, and mark the one you are least ready for.

Deliverable: A one-page map of the 3 reported rounds, with the weakest marked.

Day 2 — Work End-to-end Problem Solving

  • Spend the session on End-to-end Problem Solving, which Integrated DNA Technologies candidates report being tested on.
  • Write one worked example in End-to-end Problem Solving and time yourself on it.

Deliverable: One timed worked example in End-to-end Problem Solving.

Day 3 — Work SQL Query Writing

  • Spend the session on SQL Query Writing, which Integrated DNA Technologies candidates report being tested on.
  • Write one worked example in SQL Query Writing and time yourself on it.

Deliverable: One timed worked example in SQL Query Writing.

Day 4 — Work Technical Coding (General)

  • Spend the session on Technical Coding (General), which Integrated DNA Technologies candidates report being tested on.
  • Write one worked example in Technical Coding (General) and time yourself on it.

Deliverable: One timed worked example in Technical Coding (General).

Day 5 — Answer out loud: Technical & Domain Knowledge

  • Answer aloud, timed: What do you know about EHS (Environment, Health, and Safety)?
  • Answer aloud, timed: How many types of valves can you name?

Deliverable: Spoken answers to 2 reported Technical & Domain Knowledge question(s), under time.

Day 6 — Answer out loud: Behavioral & Experience

  • Answer aloud, timed: Describe a problem you solved end to end.
  • Answer aloud, timed: Can you walk us through your resume and discuss your previous experience?

Deliverable: Spoken answers to 2 reported Behavioral & Experience question(s), under time.

Day 7 — Dry run for Integrated DNA Technologies

  • Run one full mock under time, then write down the two questions you most want to ask your interviewers.

Deliverable: A completed timed mock and two questions to ask.

Behavioural preparation

Behavioural rounds judge the decision you made and what it cost.

Describe a problem you solved end to end.

Medium · Behavioral & Experience

Approach

  1. Pick a story where you made the decision, not one where you watched it.
  2. State the situation in two sentences and spend the rest on the reasoning.
  3. Give the blast radius: what could have broken, and what you measured.
  4. Name the disagreement and how you resolved it with evidence.

Follow-up

  • What would you do differently if you ran that again?
  • How did you know your change caused the improvement?

Can you walk us through your resume and discuss your previous experience?

Medium · Behavioral & Experience

Approach

  1. Pick a story where you made the decision, not one where you watched it.
  2. State the situation in two sentences and spend the rest on the reasoning.
  3. Give the blast radius: what could have broken, and what you measured.
  4. Name the disagreement and how you resolved it with evidence.

Follow-up

  • What would you do differently if you ran that again?
  • How did you know your change caused the improvement?

Reverse your own decision and price the reversal

Medium · reversibility · measurement · migrations

Describe a technical decision you made and later reversed. Pick one that cost something: a service you split and merged back, a cache you added and removed, an index you created that pushed the planner onto a worse plan, a projection you rebuilt from scratch. State what you believed when you decided, the measurement that changed your mind, how long the wrong version ran in production, and what the reversal cost in migrations, dual writes, and a deprecation window for callers you did not own.

Approach

  1. State the original rationale without irony, in the version you would still defend given what was known then. If it is not defensible, the story is about carelessness rather than judgement, and a different example serves you better.
  2. Give the measurement that moved with a before and after: the p99 that did not improve, the cache hit rate that sat at 40%, the plan that flipped to a sequential scan once the table passed a size you can name.
  3. Cost the reversal in steps, not adjectives: expand-and-contract deploys, the dual-write window, the callers who had to be notified, the rows already written in the wrong shape that had to be backfilled or abandoned.
  4. Distinguish reversal from rewrite by naming what you kept. Most good reversals preserve the schema or the interface and undo one decision inside it, which is also why they were affordable.

Follow-up

  • What in that decision was irreversible, and did you know it was irreversible when you made it?
  • How did you tell the people who had already built on top of the original decision?